Steady-state,Pre-steady-state,and Single-turnover Kinetic Measurement for DNA Glycosylase Activity

Human 8-oxoguanine DNA glycosylase (OGG1) excises the mutagenic oxidative DNA lesion 8-oxo-7,8-dihydroguanine (8-oxoG) from DNA. Kinetic characterization of OGG1 is undertaken to measure the rates of 8-oxoG excision and product release. When the OGG1 concentration is lower than substrate DNA, time courses of product formation are biphasic; a rapid exponential phase (i.e. burst) of product formation is followed by a linear steady-state phase. The initial burst of product formation corresponds to the concentration of enzyme properly engaged on the substrate, and the burst amplitude depends on the concentration of enzyme. The first-order rate constant of the burst corresponds to the intrinsic rate of 8-oxoG excision and the slower steady-state rate measures the rate of product release (product DNA dissociation rate constant, k_off). Here, we describe steady-state, pre-steady-state, and single-turnover approaches to isolate and measure specific steps during OGG1 catalytic cycling. A fluorescent labeled lesion-containing oligonucleotide and purified OGG1 are used to facilitate precise kinetic measurements. Since low enzyme concentrations are used to make steady-state measurements, manual mixing of reagents and quenching of the reaction can be performed to ascertain the steady-state rate (k_off). Additionally, extrapolation of the steady-state rate to a point on the ordinate at zero time indicates that a burst of product formation occurred during the first turnover (i.e. y-intercept is positive). The first-order rate constant of the exponential burst phase can be measured using a rapid mixing and quenching technique that examines the amount of product formed at short time intervals (<1 sec) before the steady-state phase and corresponds to the rate of 8-oxoG excision (i.e. chemistry). The chemical step can also be measured using a single-turnover approach where catalytic cycling is prevented by saturating substrate DNA with enzyme (E>S). These approaches can measure elementary rate constants that influence the efficiency of removal of a DNA lesion.     

Measuring Cation Transport by Na,K- and H,K-ATPase in Xenopus Oocytes by Atomic Absorption Spectrophotometry: An Alternative to Radioisotope Assays

Whereas cation transport by the electrogenic membrane transporter Na⁺,K⁺-ATPase can be measured by electrophysiology, the electroneutrally operating gastric H⁺,K⁺-ATPase is more difficult to investigate. Many transport assays utilize radioisotopes to achieve a sufficient signal-to-noise ratio, however, the necessary security measures impose severe restrictions regarding human exposure or assay design. Furthermore, ion transport across cell membranes is critically influenced by the membrane potential, which is not straightforwardly controlled in cell culture or in proteoliposome preparations. Here, we make use of the outstanding sensitivity of atomic absorption spectrophotometry (AAS) towards trace amounts of chemical elements to measure Rb⁺ or Li⁺ transport by Na⁺,K⁺- or gastric H⁺,K⁺-ATPase in single cells. Using Xenopus oocytes as expression system, we determine the amount of Rb⁺ (Li⁺) transported into the cells by measuring samples of single-oocyte homogenates in an AAS device equipped with a transversely heated graphite atomizer (THGA) furnace, which is loaded from an autosampler. Since the background of unspecific Rb⁺ uptake into control oocytes or during application of ATPase-specific inhibitors is very small, it is possible to implement complex kinetic assay schemes involving a large number of experimental conditions simultaneously, or to compare the transport capacity and kinetics of site-specifically mutated transporters with high precision. Furthermore, since cation uptake is determined on single cells, the flux experiments can be carried out in combination with two-electrode voltage-clamping (TEVC) to achieve accurate control of the membrane potential and current. This allowed e.g. to quantitatively determine the 3Na⁺/2K⁺ transport stoichiometry of the Na⁺,K⁺-ATPase and enabled for the first time to investigate the voltage dependence of cation transport by the electroneutrally operating gastric H⁺,K⁺-ATPase. In principle, the assay is not limited to K⁺-transporting membrane proteins, but it may work equally well to address the activity of heavy or transition metal transporters, or uptake of chemical elements by endocytotic processes.     

Fast Micro-iontophoresis of Glutamate and GABA: A Useful Tool to Investigate Synaptic Integration

One of the fundamental interests in neuroscience is to understand the integration of excitatory and inhibitory inputs along the very complex structure of the dendritic tree, which eventually leads to neuronal output of action potentials at the axon. The influence of diverse spatial and temporal parameters of specific synaptic input on neuronal output is currently under investigation, e.g. the distance-dependent attenuation of dendritic inputs, the location-dependent interaction of spatially segregated inputs, the influence of GABAergig inhibition on excitatory integration, linear and non-linear integration modes, and many more.With fast micro-iontophoresis of glutamate and GABA it is possible to precisely investigate the spatial and temporal integration of glutamatergic excitation and GABAergic inhibition. Critical technical requirements are either a triggered fluorescent lamp, light-emitting diode (LED), or a two-photon scanning microscope to visualize dendritic branches without introducing significant photo-damage of the tissue. Furthermore, it is very important to have a micro-iontophoresis amplifier that allows for fast capacitance compensation of high resistance pipettes. Another crucial point is that no transmitter is involuntarily released by the pipette during the experiment.Once established, this technique will give reliable and reproducible signals with a high neurotransmitter and location specificity. Compared to glutamate and GABA uncaging, fast iontophoresis allows using both transmitters at the same time but at very distant locations without limitation to the field of view. There are also advantages compared to focal electrical stimulation of axons: with micro-iontophoresis the location of the input site is definitely known and it is sure that only the neurotransmitter of interest is released. However it has to be considered that with micro-iontophoresis only the postsynapse is activated and presynaptic aspects of neurotransmitter release are not resolved. In this article we demonstrate how to set up micro-iontophoresis in brain slice experiments.     

不同大豆品种上红绿两种色型豌豆蚜的种群参数

【目的】探讨不同大豆品种对红绿两种色型豌豆蚜Acyrthosiphon pisum种群参数的影响,为大豆品种的抗蚜性评价及豌豆蚜的预测预报与综合防治提供试验依据。【方法】在光周期10L∶14D、温度23±1℃,相对湿度60%±10%,光照强度212μmol/m~2·s的人工气候箱中,观察和分析4个大豆品种(汾豆牧绿2号、南夏豆25、南黑豆20和南豆5号)叶片上红绿两种色型豌豆蚜的成虫寿命、繁殖和种群生命表参数。【结果】在大豆品种汾豆牧绿2号上,红绿两种色型豌豆蚜成虫寿命均最短,繁殖力均最弱,且红色型豌豆蚜成虫寿命比绿色型长1.07 d,内禀增长率是绿色型豌豆蚜的29.93倍;在南夏豆25上,红色型豌豆蚜成虫寿命比绿色型长2.46 d,内禀增长率是绿色型豌豆蚜的5.86倍;在南黑豆20上,红色型豌豆蚜成虫寿命比绿色型长2.47 d,内禀增长率是绿色型豌豆蚜的1.54倍;在南豆5号上,红色型豌豆蚜成虫寿命比绿色型短0.02 d,内禀增长率是绿色型豌豆蚜的1.41倍。【结论】不同大豆品种对红色和绿色型豌豆蚜种群参数的影响不同,且两种色型豌豆蚜对不同大豆品种适应性反应也不相同。     

Biology and fertility life table of the greenbug,Schizaphis graminum (Hemiptera: Aphididae) on the resistant winter wheat cultivar (Pishgam) in Iran

The greenbug, Schizaphis graminum (Rondani) (Hemiptera: Aphididae) has been known as a major pest of small grains, particularly wheat, worldwide. In this study, the effect of new wheat cultivar (Pishgam) for cold regions on biological characteristics of greenbug was investigated in a greenhouse at 25 ± 2 °C, 55 ± 10% relative humidity and a photoperiod of 16:8 h (L:D). The raw data were analysed based on the age-stage, two-sex life table. The intrinsic rate of increase (r), the finite rate of increase (λ), the net reproduction rate (R₀) and the mean generation time (T) of greenbug were 0.313 ± 0.0019, 1.36 ± 0.0027 females/female/day, 83.33 ± 0.331 females/female and 14.11 ± 0.09 days, respectively. The life expectancy of a nymph is 43.57 days. The maximum reproductive value of females is on the 16th day which coincides with the total pre-reproduction period counted from birth. Hence, the present results may provide helpful information for comprehensive IPM programme of greenbug on this variety in cold regions of Iran. Result revealed that nymphal survival rate of the aphid was 100% on studied cultivar like that on sensitive host plant cultivar.     

Studies on the Pathogenic Potential and Life Cycle of Reniform Nematode on Broccoli

The significant reduction in the plant growth was observed at an initial inoculum level of 2 immature females of Rotylenchulus reniformis/g soil and hence this inoculum level was considered as the minimum damaging threshold level for broccoli. The population of reniform nematode increased with the increasing levels of inoculum. Though, the maximum nematode population was recorded at the highest level of inoculum, the rate of reproduction of nematode was found to be highest at the lowest level of initial inoculum. Symptoms like chlorosis, stunted growth, shedding of leaves, early sprouting of inflorescence and sparsely developed roots were found during the experimental studies. Rotylenchulus reniformis required 30 days to complete the life cycle on broccoli.     

Survival,development and reproduction of Euseius finlandicus (Oudemans) (Acari: Phytoseiidae) fed on various kinds of food substances

Laboratory experiments were conducted to investigate the effect of diet on the biology of the phytoseiid mite, Euseius finlandicus (Oudemans). The predatory mite was able to develop and reproduce better when fed on the eriophyid mites, Aceria olivi (Zaher and Abou-Awad), Aceria dioscoridis (Soliman and Abou-Awad) and Cisaberoptus kenyae (Keifer). The developmental time of immature stages was the shortest when fed on motile stages of eriophyid mite species, followed by the spider mite, Tetranychus urticae Koch, and then pollen grains of Ricinus communis L., Phoenix dactylifera L. and Helianthus annuus L. Total egg production was highest when the predator fed on A. olivi, A. dioscoridis and C. kenyae recording at the rate of 51.0 50.0 and 43.84 eggs/female, respectively, but lowest on pollen grains, R. communis, P. dactylifera and H. annuus at the rate of 11.96, 5.3 and 2.0 eggs/female, respectively. But, the reproduction was nil on the tetranychid mite, T. urticae. Also, sex ratio of the progeny favoured females, when the predatory mite was reared on the eriophyid preys. E. finlandicus recorded the highest intrinsic rate of increase (r_m?=?0.31 females/female/day) when fed on A. dioscoridis, followed by (0.30 and 0.23 females/female/day) when fed on A. olivi and C. kenyae, respectively. In contrast, the lowest intrinsic rate of increase (r_m?=??0.31) was noted when fed on H. annuus pollen grains. The eriophyid mite, as a prey, recorded the shortest developmental time and highest oviposition rate of E. finlandicus.     

Agistemus exsertus Gonzalez (Acari: Stigmaeidae) as a predator of two scale insects of the family Diaspididae (Homoptera: Diaspididae)

Abstract

The predacious mite Agistemus exsertus Gonzalez completed its life-span when fed on eggs and crawlers of the Florida red scale Chrysomphalus ficus Ashmead and the white date scale Parlatoria blanchardi (Targioni). The development was faster when individuals were maintained on eggs and crawlers of C. ficus, compared with both stages of P. blanchardi. The average number of eggs/female/day was 2.5 and 1.1 on eggs and crawlers of C. ficus, respectively. Eggs and crawlers of P. blanchardi were an unsuitable food for egg laying for A. exsertus. Life table parameters showed that A. exsertus preferred eggs of C. ficus to the crawlers as prey. The population of the predator feeding on eggs and crawlers of Florida red scale multiplied 45 and 7 times in a generation time of 23 and 20.5 days, respectively. Under these conditions, the intrinsic rate of increase (r _m) was (0.17 and 0.098) individuals/female/day on eggs and crawlers of C. ficus, while the finite rate of increase (λ) was (1.18 and 1.11) on both stages of C. ficus.     

Life table parameters of large white butterfly Pieris brassicae (Lepidoptera: Pieridae) on different cabbage varieties

Effect of four different cole crops (Brassica oleracea var. botrytis, Brassica oleracea var. capitata, Brassica oleracea var. italica and Brassica oleracea var. viridis) on biological parameters of the large white butterfly Pieris brassicae was evaluated at temperature 26 ± 1 °C, 60 ± 5% R. H. and a photoperiod of 16: 8 (L:D) h. The shortest larval and pupal period stages were recorded on B. oleracea var. botrytis (22.18 ± 0.20 days) and (13.32 ± 0.17 days), respectively. The life span was longest on B. oleracea var. viridis (60.43 ± 2.34 days) and shortest on B. oleracea var. botrytis (50.19 ± 0.51 days). The highest percentage of larval and pupal mortality was observed on B. oleracea var. viridis (74%), and (53%), respectively. We found that P. brassicae prefers B. oleracea var. botrytis and B. oleracea var. capitata among cole crops; it is due to the lowest percentage of larval and pupal mortality and the highest rate of life table parameters, including survival rate (lx) and life expectancy (ex), which makes them to be susceptible varieties to this pest. Contrary, a longer developmental time on B. oleracea var. viridis may be attributed to poor nutritional status and reduced survival of the cohort, resulting in high rates of mortality, which was partial resistance to pest. Knowledge of the biology and life table parameters of P. brassicae on different cole crops could be effective in detecting and monitoring the pest infestation, variety selection and crop breeding.     

Prominence of three diets on life table parameters for Chrysoperla carnea (Neuroptera: Chrysopidae) to mass rearing under laboratory conditions

Chrysoperla carnea (Steph.) is a general predator reared in industrial scale. Different eggs of moth were used to rear C. carnea, but stabled moth colony needed expensive equipment and is costly. In this research, we surveyed appropriate diet to mass rearing. For this purpose, 100 same old (24H) eggs of C. carnea, separately, were selected randomly from the mass culture of C. carnea which was reared on the egg of flour moth Anagasta kuehniella (Zeller), artificial diet and semi-artificial diet under laboratory conditions (25 ± 5°C, 65 ± 5% RH and L–D: 16–8). These results showed reduction process e_x (expectation of life table at age X) and the survival curve was convex (K-Strategy). Also L_x in appearing of adults that fed on egg of flour moth, artificial diet and semi-artificial diet were 0.76, 0.4 and 0.9 which implied that 24, 60 and 10% of cohort were dead before reaching adult stage. Eggs produced by each female were recorded daily until all females died. The parameters were estimated using Carey’s (1993) method. Gross (GRR) and net (R₀) reproductive rates of predator on A. kuehniella, artificial diet and semi artificial diets were 225.5 ± 3.45, 72.4 ± 3.5, 267.8 ± 4.8 and 180.12 ± 2.3, 24.33 ± 4.3, 254.05+3.3 (female/female/generation), respectively. Mean generation time (T), Doubling time (DT), Intrinsic rate of increase (r_m ) and Finite rate of increase (λ) of predator on A. kuehniella, artificial diet and semi artificial diet were 31.9 ± 0.71, 42.87 ± 0.45, 29.79 ± 0.57 (days); 4.27 ± 0.03, 9.36 ± 0.06, 3.74 ± 0.05 (days); 0.162 ± 0.001, 0.074 ± 0.003, 1.185 ± 0.002; and 1.175 ± 0.001, 1.076 ± 0.002, 1.203 ± 0.002 (female/female/day), respectively. This research indicated that semi-artificial diet is a suitable prey for the predator.